Probably nothing originl at this point (already many good suggestions) but what I typically use in MOO2 is
Exploration / scout ships - explorers / explorers ships: Columbus, Beagle, Kon tiki, Sir Francis Drake etc
Destroyers - Famous military figures / warriors: Patton, MacArthur, Rommel, Beowulf
Cruisers - Cities: San Francisco, Kiev, London
Battlecruisers - States / national leaders: California, Nevada, Quebec, George Washington, Lenin
Battleships - Countries: United States, Scotland, China
Dreadnaughts - Planets / Stars / Mythic gods (depending on how many I build): Earth, Mars, Apollo, Athena, Thor, Sol, Betelguise
Superdreadnaughts? (the deathstar looking things) - Galaxies: Andromida, Alpha Centari
Other popular names are action words Invincible, Titanic, Endeaver or Cultural names Apache Warrior, Viking, Zulu, Knight
Often ship names will identify the type and class (battleships named after states, class grouped by region California Class (California, Nevada, Oregon, Arizona), New York Class (New York, Pensylvania, New Jersey) etc
Typically I'll split the classes into specific themes of the above, for example 3 classes of Batlecruisers (American Presidents) George washington, Abraham Lincoln, Theodore Roosevelt, (States) California, Oregon, New Jersey (European Leaders) DeGaul, Churchill, Hindenberg
Or armed scouts vs science vessels Darwin, Powell, Lewis & Clark vs Coronado, Drake etc
This way at a glance I know which class of Battlecruiser I am looking at and its capability. If my first battle cruisers are the American Presidents and my most recent is Communist leaders I know which of my ships are the most modern and capable, similar groupings can identify armament as well missle cruisers will have their own theme to identify them as differant from phaser armed ships.
There are endless ways of naming ships the main thing to me to make them "realistic" is to use some kind of system and stick to it.
There were frogs there all right, thousands of them. Their voices beat the night, they boomed and barked and croaked and rattled. They sang to the stars, to the waning moon, to the waving grasses. They bellowed love songs and challenges.
John Steinbeck, Cannery Row
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